PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01001480G0410
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 240aa    MW: 25738.7 Da    PI: 5.7205
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01001480G0410genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.38e-1857108154
              AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkle 54 
                      + ++GVr++ + grWv+e+r+p   g +  r +lg+f+tae Aa+a++aa++++ 
  PH01001480G0410  57 PVFRGVRRRGNAGRWVCEVRVP---GrRGCRLWLGTFDTAEAAARAHDAAMLAIA 108
                      579******************9...6445**********************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-1357109IPR001471AP2/ERF domain
PROSITE profilePS5103221.48358117IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-1958119IPR016177DNA-binding domain
SMARTSM003802.9E-2058123IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.6E-2858119IPR001471AP2/ERF domain
CDDcd000181.41E-1159119No hitNo description
PRINTSPR003673.9E-55970IPR001471AP2/ERF domain
PRINTSPR003673.9E-58399IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MNRELLKRMC QIKKEMSGES GSPCSPASTS SSEHQTVWTS PPKRPAGRTK FRETRHPVFR  60
GVRRRGNAGR WVCEVRVPGR RGCRLWLGTF DTAEAAARAH DAAMLAIAGR DTCLNFADSA  120
WLLAVPASYR SLADVRHAVP KAVEDFQRRE ALAEDALSAT SSTPSSPTDA DAATATATAD  180
ESSSPAEDTP FDLDVLSDMG WDLYYASLAQ GMLMEPPSAA AAFGDDGGAN LADVPLWSY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7858991e-133AY785899.1 Sorghum bicolor cultivar BTX 623 SbCBF6 (CBF6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015610912.11e-113PREDICTED: dehydration-responsive element-binding protein 1A
SwissprotQ64MA11e-115DRE1A_ORYSJ; Dehydration-responsive element-binding protein 1A
TrEMBLK7SPM11e-113K7SPM1_ORYSI; DRE-binding factor 1A
TrEMBLA0A0E0IMJ11e-113A0A0E0IMJ1_ORYNI; Uncharacterized protein
TrEMBLI6SBR01e-113I6SBR0_ORYSA; DRE-binding factor 1A
TrEMBLA0A0E0QU081e-113A0A0E0QU08_ORYRU; Uncharacterized protein
TrEMBLA0A0E0B5H21e-113A0A0E0B5H2_9ORYZ; Uncharacterized protein
STRINGLOC_Os09g35030.11e-113(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25470.12e-30C-repeat/DRE binding factor 2